Harness spec 3.1.0: the prefix stays still, in the CLI

The system prompt is made once per session (start, compaction, model
switch), kept in session_meta and resent byte for byte; it holds no
date. What changes mid-session -- the date, a mode the person chose, a
plan or memory or instruction file they edited, a personality, MCP
instructions that arrived later -- is a <session-note> on the next user
message, stored with it. The tool list is fixed for the session:
plan_submit is always offered and answers unavailable outside plan
mode, the wrap-up keeps the tools and runs no call, a withdrawn tool
stays listed and answers its refusal; the first request waits up to
mcp_wait_ms for MCP servers. Compaction asks for its summary as the
next turn of the same conversation. Cached input tokens are parsed
(incl. llama.cpp timings), stored per request and shown in /context.

Spec: context.md §7/§10, loop.json context.note (+ plan_ended,
plan_own, personal, empty, mcp_wait_ms), modes.json plan.refused,
compact.md without the transcript heading. Conformance area prefix.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

harness/permission/modes.json

@@ -32,7 +32,8 @@
       "read": "rules",
       "write": "allow only for files under the plans directory; anything else is refused",
       "execute": "only what the rules already allow; anything else is refused",
-      "interact": "rules"
+      "interact": "rules",
+      "refused": "Plan mode: nothing changes but the plan. Put what this would do into the plan with plan_write or plan_update; it can be done once the person approves the plan."
     }
   },
   "unattended": "With nobody to answer, whatever a mode would ask is refused instead, and the model is told so up front (prompts/modes/unattended.md)."